Hoechst Janelia Fluor® 526

Tocris Bioscience | Catalog # 7313

Fluorogenic, green-emitting DNA probe. Used for: fixed and live-cell imaging. Application: confocal microscopy, flow cytometry, super resolution microscopy (SRM)
Tocris Bioscience
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Key Product Details

Description

Fluorogenic, green-emitting DNA probe. Used for: fixed and live-cell imaging. Application: confocal microscopy, flow cytometry, super resolution microscopy (SRM)

Alternative Names

JF526-HST

Wavelength

Excitation = 531 nm, Emission = 549 nm

Product Description

Key information

: Hoechst Janelia Fluor® 526 is a fluorogenic, green-emitting DNA probe. Suitable for live cell imaging.

Used for: fixed and live-cell imaging.

Application: confocal microscopy, flow cytometry, super resolution microscopy (SRM).

Properties and Photophysical Data: preferentially stains and binds minor groove of AT-rich regions. When bound to A-T DNA, Hoechst Janelia Fluor&reg 526 exhibits a quantum yield (QY) of 0.126; when bound to G-C DNA Hoechst Janelia Fluor® 526 exhibits a quantum yield of 0.04. Fluorogenic, it fluoresces only once bound to DNA, enabling hassle-free no-wash experiments. Hoechst Janelia Fluor® 526 can be combined with fluorogenic red-emitting DNA probe Hoechst Janelia Fluor® 646 (Cat. No. 6804) for multiplexing experiments. Excitation and emission maxima (λ) are 531 nm and 549 nm, respectively; quantum yield = 0.126; extinction coefficient = 118,000 M-1cm-1.

To measure the absorbance spectrum of Hoechst Janelia Fluor® 526 we recommend the following solvent: TFE plus 0.1% TFA.

Scientific Data Images for Hoechst Janelia Fluor® 526

Application of Hoechst Janelia Fluor® 526 in U2OS cells.

Application of Hoechst Janelia Fluor® 526 in U2OS cells.

Fixed U2OS cells were stained with Hoechst Janelia Fluor® 526 (2 µM) for 1 hour and imaged without an intermediate washing step on a LSM980 confocal microscope (Zeiss) using the following configuration: excitation: 514 nm / emission: 526–615 nm. Image kindly provided by Prof. Luke Lavis, Howard Hughes Medical Institute, Janelia Research Campus.

Licensing Information

Sold under license from the Howard Hughes Medical Institute, Janelia Research Campus

Optical Data

Hoechst Janelia Fluor<sup>®</sup> 526 Dye Spectra
Emission Color Yellow
λabs 531 nm
λem 549 nm
Extinction Coefficient (ε) 118,000 M-1cm-1
Quantum Yield (φ) 0.126
Application Confocal Microscopy, Flow Cytometry, Super Resolution Microscopy (SRM)

Spectra Viewer

Plan Your Experiments

Use our spectra viewer to interactively plan your experiments, assessing multiplexing options. View the excitation and emission spectra for our fluorescent dye range and other commonly used dyes.

Spectra Viewer

Product Specifications for Hoechst Janelia Fluor® 526

Molecular Weight

1641.27

Formula

C62H58F6N10O8.4CF3CO2H

Storage

Store at -20°C

Purity

≥95% (HPLC)

Chemical Name

2-(3-(3,3-Difluoroazetidin-1-ium-1-ylidene)-6-(3,3-difluoroazetidin-1-yl)-2,7-difluoro-3H-xanthen-9-yl)-4-((2-(2-(2-(4-(4-(6-(4-methylpiperazin-1-yl)-1H,3'H-[2,5'-bibenzo[d]imidazol]-2'-yl)phenoxy)butanamido)ethoxy)ethoxy)ethyl)carbamoyl)benzoate tetratrifluoroacetate

InChI Key

AFTKOWWBAAQRNW-UHFFFAOYSA-N

SMILES

CN1CCN(CC1)C2=CC=C3N=C(NC3=C2)C4=CC=C5N=C(NC5=C4)C6=CC=C(OCCCC(NCCOCCOCCNC(C7=CC(C8=C9C=C(F)/C(C=C9OC%10=C8C=C(F)C(N%11CC(C%11)(F)F)=C%10)=[N+]%12CC(C\%12)(F)F)=C(C=C7)C([O-])=O)=O)=O)C=C6.O=C(C(F)(F)F)O.O=C(C(F)(F)F)O.O=C(C(F)(F)F)O.O=C(C(F)(F)F)O

The technical data provided above is for guidance only. For batch specific data refer to the Certificate of Analysis.

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Solubility

Solvent Max Conc. mg/mL Max Conc. mM
Solubility
DMSO 12.99 10

Preparing Stock Solutions for Hoechst Janelia Fluor® 526

The following data is based on the product molecular weight 1641.27.

Batch specific molecular weights may vary from batch to batch due to the degree of hydration, which all affect the solvent volumes required to prepare stock solutions.

Select a batch to recalculate based on the batch molecular weight:

Concentration / Solvent Volume / Mass 1 mg 5 mg 10 mg
0.1 mM 6.09 mL 30.46 mL 60.93 mL
0.5 mM 1.22 mL 6.09 mL 12.19 mL
1 mM 0.61 mL 3.05 mL 6.09 mL
5 mM 0.12 mL 0.61 mL 1.22 mL

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Background References

References are publications that support the biological activity of the product.

Product Documents for Hoechst Janelia Fluor® 526

Certificate of Analysis

To download a Certificate of Analysis, please enter a lot or batch number in the search box below.

Product Specific Notices for Hoechst Janelia Fluor® 526

For research use only

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