SiRA 2

Tocris Bioscience | Catalog # 7544

Fluorogen for SiRA light-up aptamer. Application: confocal microscopy, SRM (including STED)
Tocris Bioscience
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Key Product Details

Description

Fluorogen for SiRA light-up aptamer. Application: confocal microscopy, SRM (including STED)

Wavelength

Excitation = 649 nm, Emission = 662 nm

Product Description

Key information: SiRA 2 (silicon rhodamine 2) is a near-infrared (NIR) fluorogen for SiRA light-up aptamer. SiRA 2 enables imaging of single RNA in living cells.

Application: confocal microscopy, super resolution microscopy (SRM) techniques, including super-resolution stimulated emission depletion (STED). Cell permeable.

Properties and Photophysical Data: SiRA 2 is extremely bright, photostable and allows the visualization of mRNA expression in bacteria in no-wash, quencher-free, live-cell imaging experiments. Excitation and emission maxima (λ) are 649 nM and 662 nM, respectively; quantum yield = 0.98; extinction coefficient = 86,000 M-1cm-1; KD = 403 nM.

Reconstitute in 200 μL for a 0.5 mM stock solution. A typical working concentration for this product is 500 nM, see references provided for more details.

We recommend using 5mM Mg2+ (MgCl2 or MgSO4) in all buffers/media for maximum fluorescence intensity.

Licensing Information

Sold with kind permission of Prof. Andres Jäschke

Optical Data

SiRA 2 Dye Spectra
Emission Color Far Red
λabs 649 nm
λem 662 nm
Extinction Coefficient (ε) 86000 M-1cm-1
Quantum Yield (φ) 0.98
Closest Laser line 640 nm
Cell Permeable Yes

Spectra Viewer

Plan Your Experiments

Use our spectra viewer to interactively plan your experiments, assessing multiplexing options. View the excitation and emission spectra for our fluorescent dye range and other commonly used dyes.

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Product Specifications for SiRA 2

Molecular Weight

602.81

Formula

C33H42N4O5Si

Storage

Store at -20°C

Purity

≥90% (HPLC)

Chemical Name

(5-((2-(2-(2-Aminoethoxy)ethoxy)ethyl)carbamoyl)-2-(7-(dimethylamino)-3-(dimethyliminio)-5,5-dimethyl-3,5-dihydrodibenzo[b,e]silin-10-yl)benzoate)

CAS Number

2365417-91-8

PubChem ID

168440271

InChI Key

VZACMAUVTBSQSR-UHFFFAOYSA-N

SMILES

CN(C1=CC=C2C([Si](C)(C3=C/C(C=CC3=C2C4=C(C([O-])=O)C=C(C(NCCOCCOCCN)=O)C=C4)=[N+](C)\C)C)=C1)C

The technical data provided above is for guidance only. For batch specific data refer to the Certificate of Analysis.

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Solubility

Solvent Max Conc. mg/mL Max Conc. mM
Solubility
water 30.14 50
DMSO 60.28 100

Preparing Stock Solutions for SiRA 2

The following data is based on the product molecular weight 602.81.

Batch specific molecular weights may vary from batch to batch due to the degree of hydration, which all affect the solvent volumes required to prepare stock solutions.

Select a batch to recalculate based on the batch molecular weight:

Concentration / Solvent Volume / Mass 1 mg 5 mg 10 mg
1 mM 1.66 mL 8.29 mL 16.59 mL
5 mM 0.33 mL 1.66 mL 3.32 mL
10 mM 0.17 mL 0.83 mL 1.66 mL
50 mM 0.03 mL 0.17 mL 0.33 mL

Calculators

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Background References

References are publications that support the biological activity of the product.

Product Documents for SiRA 2

Certificate of Analysis

To download a Certificate of Analysis, please enter a lot or batch number in the search box below.

Product Specific Notices for SiRA 2

For research use only

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