DGCR8 knockout Mouse embryonic stem cells

Novus Biologicals | Catalog # NBA1-19349

Novus Biologicals
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Key Product Details

Species

Mouse

Applications

Flow Cytometry, Functional Assay, Immunocytochemistry/ Immunofluorescence
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Product Specifications

Applications

In vivo assay (reported in scientific literature)

Application Notes

Recommended Media: StemXVivo Mouse Pluripotent Stem Cell Media Kit (R&D Systems, Cat# CCM025). Please see Protocol for aditional culturing conditions.

Scientific Data Images for DGCR8 knockout Mouse embryonic stem cells

Immunocytochemistry/ Immunofluorescence: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349]

Immunocytochemistry/ Immunofluorescence: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349]

Immunocytochemistry/Immunofluorescence: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349] - SSEA1 antibody (NB100-1831) was tested in with DyLight 488 (green). Nuclei and beta-tubulin were counterstained with DAPI (blue) and DyLight 550 (red).
Flow Cytometry: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349]

Flow Cytometry: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349]

Flow Cytometry: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349] - DCGR8 mouse embryonic stem cells were cultured for 5 passages in StemXVivo Mouse Pluripotent Stem Cell Media (R&D Systems, Catalog # CCM025). At passage 5, cells were harvested and analyzed for pluripotent markers by flow cytometry. Expression of SSEA-1 and SSEA-4 were detected using PE-conjugated Mouse Anti-SSEA-1 Monoclonal Antibody (R&D Systems, Catalog # FAB2155P) and APC-conjugated Mouse Anti-SSEA-4 Monoclonal Antibody (R&D Systems, Catalog # FAB1435A). Quadrant lines were drawn based on matched isotype controls.
Immunocytochemistry/ Immunofluorescence: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349]

Immunocytochemistry/ Immunofluorescence: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349]

Immunocytochemistry/Immunofluorescence: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349] - Nanog antibody (NB100-58842) was tested in with DyLight 488 (green). Nuclei and alpha-tubulin were counterstained with DAPI (blue) and DyLight 550 (red).
In vitro assay: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349]

In vitro assay: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349]

In vitro assay: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349] - Brightfield Image of DGCR8 knockout Mouse embryonic stem cell [NBA1-19349] colonies growing directly on a gelatinized tissue culture flask.
In vitro assay: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349]

In vitro assay: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349]

In vitro assay: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349] - Brightfield Image of DGCR8 knockout Mouse embryonic stem cell [NBA1-19349] colonies growing on a Mitomycin C MEF cell feeder layer.
In vitro assay: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349]

In vitro assay: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349]

In vitro assay: DGCR8 knockout Mouse embryonic stem cells [NBA1-19349] - Brightfield Image of DGCR8 -/- ES cell colonies growing on a gamma-irradiated MEF cell feeder layer.

Formulation, Preparation, and Storage

Formulation

Cells are supplied in 2 ml quantities (about 1x10 ^ 6 cells/ml) in Freezing Media (60% DMEM, 20% FBS, 20% DMSO)

Concentration

Please see the protocols for proper use of this product. If no protocol is available, contact technical services for assistance.

Shipping

The product is shipped with dry ice or equivalent. Upon receipt, store it immediately at the temperature recommended below.

Storage

Store in gas phase of liquid nitrogen.

Background: DGCR8 knockout Mouse embryonic stem cells

MicroRNAs are abundant, 21-25 nucleotide non-coding RNAs that are important endogenous regulators of gene expression. MicroRNAs work by specifically regulating messenger RNAs (mRNAs), and are predicted to regulate hundreds of genes individually and simultaneously, affecting cellular functions such as differentiation, development, proliferation, and apoptosis. The specific regulation at both the transcription and the translation level opens the possibility to use microRNAs as targets for the development of drugs and for the diagnosis of several human diseases. Novus Biologicals now offers a novel a line of DGCR8 knockout mouse embryonic stem (ES) cells to study the global role of microRNAs. Embryonic stem cells provide a tool for the study of the molecular mechanisms of early mammalian development. The DGCR8 cells have been genetically altered at the locus of the dgcr8 gene such that no functional DGCR8 protein can be produced, resulting in the global, but specific, loss of micro RNAs. The DGCR8 knockout mouse embryonic stem (ES) cells are unique because they allow for the specific study of the global role of microRNAs. Unlike the Dicer cell line, the only other comparable line for studying microRNAs, the DGCR8 cell line appears to be specific for microRNAs, whereas Dicer also affects other classes of small RNAs. Mouse Dicer1 knockout ES cells have been useful for inferring the role for small RNAs in ES cell differentiation. Dicer is required for the maturation of at least two classes of small RNAs: microRNAs and short interfering RNAs (siRNAs). Thus, in studies using Dicer1 knockout ES cells it can be difficult to isolate whether the lack of microRNAs alone are the cause of the observed phenotype. DGCR8 is part of the microprocessor complex, which is composed of the proteins DGCR8 and Drosha. The microprocessor complex handles microRNA processing; unlike Dicer, this complex seems to be specific to microRNAs. Of the two components of the microprocessor complex, Drosha has been reported to have a role in ribosomal RNA processing, possibly in a distinct protein complex, while DGCR8 does not. Therefore, DGCR8 may be the only member of the processing pathway that is specific to microRNAs. These cells are useful for the specific study of microRNA function in both embryonic stem cells as well as derivatives of embryonic stem cells (e.g. differentiated cells from embryonic stem cells).

Alternate Names

C22orf12, DGCRK6chromosome 22 open reading frame 12, DiGeorge syndrome critical region 8, DiGeorge syndrome critical region gene 8, Gy1, microprocessor complex subunit DGCR8, pasha

Gene Symbol

DGCR8

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Product Specific Notices for DGCR8 knockout Mouse embryonic stem cells

This product is for research use only and is not approved for use in humans or in clinical diagnosis. Support products are guaranteed for 6 months from date of receipt.

Citations for DGCR8 knockout Mouse embryonic stem cells

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Protocols

View specific protocols for DGCR8 knockout Mouse embryonic stem cells (NBA1-19349):


Protocol Specific for DGCR8 knockout Mouse embryonic stem cells

Growing DGCR8 mouse ES cells

This protocol is written for growing cells in T25 tissue culture flasks, please make changes accordingly for flasks of different sizes. ES cells are routinely cultured in ES medium in the presence of LIF on a mitotically inactivated MEF feeder layer grown on gelatin.

1. Media:
ESL1000 for ES cells:
DMEM-Hi glucose 425 ml (Caisson Labs, DML10-500ML)
FBS 75 ml (biowest, US1520)
100 X non-essential amino acid 5 ml (Millipore EmbryoMax(R) TMS-001-C)
200 mM L-Glutamine 5 ml - (Sigma G7513)
100% beta-mercaptoethanol (100X for ES cells) 5 ml (Millipore EmbryoMax(R) ES-007-E)
10 ng/ml LIF (R&D Systems 8878-LF)
** or use StemXVivo Mouse Pluripotent Stem Cell Media Kit instead (R&D Systems, cat# CCM025)

MEF Media for embryonic fibroblasts:
DMEM-Hi glucose 450 ml (Caisson Labs, DML10-500ML)
FBS 50 ml (biowest, US1520)
100 X non-essential amino acid 5 ml (Millipore EmbryoMax(R) TMS-001-C)
200 mM L-Glutamine 5 ml - (Sigma G7513)
100% beta-mercaptoethanol (100X for ES cells) 5 ml (Millipore EmbryoMax(R) ES-007-E)

2. Preparation of gelatin coated tissue culture flasks:
To make gelatinized flasks, distribute a thin layer (about 2ml per T25 flask) of Millipore EmbryoMax(R) Ultrapure water with 0.1% gelatin (catalog# ES-006-B) onto a T25 tissue culture flask and incubate at 37 degrees Celsius for 15 minutes. Remove the gelatin solution and set aside.

3. MEF feeder flasks:
Maintain MEF cells in MEF media for embryonic fibroblasts. The thawed MEF cells can be grown and maintained in a regular T25 tissue culture flask and when confluent, transferred to a T150 flask. Gelatin is not needed for the culture MEF feeder cells.
a. Mitotic inactivation (Mitomycin C treatment) for preparation of ES feeder layers:
At confluence, Mitomycin C is used as a treatment to halt cell division. Use the procedure below to prepare fresh MEF feeder layers.
*Plate mitomycin C treated MEFs in a gelatinized T25 at least one day but not more than 1 week before plating ES cells on the feeder.

3.1 To one T150 tissue culture flask of confluent MEF cells: remove regular growth medium and add 40 ml of fresh MEF medium containing 40ul of Mitomycin C (Sigma, catalog# M4287-2MG) and incubate overnight.

3.2 Remove mitomycin C containing medium and wash twice with PBS, trypsinize, resuspend and replate by dispensing 2ml of MEF cell split into desired number of T25 gelatinized flasks. Note that for this step, a split ratio of about 1:1 or a bit less should be used. The reasoning behind the 1:1 split ratio is to achieve the best feeder cell density. The cells should almost completely cover the bottom of the flask but with enough space left for the ES cell colonies to spread out a bit. As it directly affects the growth of the ES cells, feeder layer quality is extremely important.

4. Thawing ES cells from -80 C or Liquid N2:
Thaw a tube of 2 X 10^6 ES cells in 37 C water bath for 1-2 minutes. During this time, prepare a 15-ml tube, add 10 ml warm ESL1000 media; then pipette out the thawed cells and mix with warm media in the 15-ml tube by gently pipetting up and down a few times. Spin down cells at 1000 rpm for 5 minutes. Aspirate off the media carefully without touching cell pellets, add 8 ml fresh ESL1000 media, pipette up and down a few times, plate onto a T25 tissue culture flask with MEF feeder cells grown on gelatin.

5. Passaging cells:
Aspirate off the media, wash once with Hank's buffered saline or PBS with 1 mM EDTA, add 2ml TrypLE (Gibco) to a T25 flask, incubate at 37 C for 1-2 minutes. Add 2 ml ESL1000 media to the flask, pipette to dislodge cells, spin at 1000rpm for 5 minutes and plate onto the T25 tissue culture flasks containing MEF feeder cells grown on gelatin. Medium is changed every day and cells are usually split at 5-6 x10^4/cm^2.

6. Freezing cells:
Freeze cells in 1 part of fresh media and 1 part of 2 X freezing media (60% DMEM, 20% FBS, 20% DMSO). Use cryo safe tube. Save tubes in a Styrofoam box at -80 C. For long term storage, move them to liquid nitrogen a few days later.

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FAQs for DGCR8 knockout Mouse embryonic stem cells

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  • Q: Hello, I am currently working with the DGCR8 knockout mouse embryonic stem cell line and would like to know how you generated the knockout? i.e. which exon is spliced out, this will aid me with primer design.

    A:

    This publication describes the generation of the knockout. Please let me know if you need more information than is provided in this PMC Article (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3008549/)

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